Read 1: /scratch/aob2x/compBio/fastq/SRP002024/SRR036932.fastq.gz
Read 2: test_file_2
Sample name: ExpEvo_SRP002024_ACO_1_1975-MM-DD
Output directory: /standard/BerglandTeach/mapping_output
Number of cores used: 11
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5