Read 1: /scratch/pmh3ax/PRJNA657615/SRR12463323_1.fastq.gz
Read 2: /scratch/pmh3ax/PRJNA657615/SRR12463323_2.fastq.gz
Sample name: ExpEvo_PRJNA657615_L91_2_1999-10-DD
Output directory: /standard/BerglandTeach/mapping_output
Number of cores used: 11
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5