Read 1: AU_Que_Isl_0_2014-03-15/AU_Que_Isl_0_2014-03-15.joint_1.fastq
Read 2: AU_Que_Isl_0_2014-03-15/AU_Que_Isl_0_2014-03-15.joint_2.fastq
Sample name: AU_Que_Isl_0_2014-03-15
Output directory: /project/berglandlab/DEST/dest_mapped/RECENT_OUTPUTS
Number of cores used: 10
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5
Maxsnape 0.9
theta:  0.005
D:  0.01
priortype: informative