Read 1: RU_Vla_Ale_1_2018-10-13.joint_1.fastq.gz Read 2: RU_Vla_Ale_1_2018-10-13.joint_2.fastq.gz Sample name: RU_Vla_Ale_1_2018-10-13 Output directory: /project/berglandlab/DEST/dest_mapped/RECENT_OUTPUTS Number of cores used: 7 Max cov: 0.95 Min cov 4 base-quality-threshold 25 illumina-quality-coding 1.8 min-indel 5 Maxsnape 0.9 theta: 0.005 D: 0.01 priortype: informative