FastQCFastQC Report
Fri 20 Jan 2023
US_Vir_Cha_1_2014-06-25.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Vir_Cha_1_2014-06-25.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119279599
Sequences flagged as poor quality0
Sequence length75-151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT2741420.22983142322602879No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA1825470.15304125896667375No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1483580.12437835241213377No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1426760.11961475490875853No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA1319270.11060315519672397No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1301800.10913852921319764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)