FastQCFastQC Report
Fri 20 Jan 2023
SRR3939077_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939077_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121977912
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT2643120.21668841158717328No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA2105490.17261239887431423No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1917700.15721698859708305No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1810860.1484580257448578No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1539640.12622285254399174No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1515620.12425364356130314No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA1450460.11891169279893887No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1386800.11369271512042278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)