FastQCFastQC Report
Fri 20 Jan 2023
SRR3939077_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3939077_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121977912
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTAT2755020.22586220364224632No Hit
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA2315740.18984912612703192No Hit
AGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGA1970070.16151038886450197No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA1683000.1379758000776403No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG1631710.13377094043059207No Hit
ATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTTATTCTATGTT1433010.11748110592350525No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT1376290.11283108371292665No Hit
GAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATA1324430.10857949429401613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)