FastQCFastQC Report
Fri 20 Jan 2023
US_Cal_Sto_1_2012-11-15.trimmed1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameUS_Cal_Sto_1_2012-11-15.trimmed1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38664481
Sequences flagged as poor quality0
Sequence length75-125
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAAC489430.1265838794008382No Hit
AGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG453990.11741784404140844No Hit
ATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACATAGA406220.10506283531906196No Hit
AGAATAACATAGAATAACATAGAATAACATAGAATAACATAGAATAACAT389000.10060913529396658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)