Read 1: /scratch/yey2sn/DEST_plus/Raw_dat_sra/SRR14308767/SRR14308767_1.fastq.gz Read 2: /scratch/yey2sn/DEST_plus/Raw_dat_sra/SRR14308767/SRR14308767_2.fastq.gz Sample name: US_Rho_Pro_4_2015-06-11 Output directory: ./pipeline_output_destplus Number of cores used: 7 Max cov: 0.95 Min cov 4 base-quality-threshold 25 illumina-quality-coding 1.8 min-indel 5 Maxsnape 0.9 theta: 0.005 D: 0.01 priortype: informative