Read 1: ./reads_se/SRR1177952/SRR1177952.fastq
Read 2: test_file_2
Sample name: AU_Que_Que_1_2004-07-01
Output directory: /project/berglandlab/DEST/dest_mapped/RECENT_OUTPUTS
Number of cores used: 7
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5
Maxsnape 0.9
theta:  0.005
D:  0.01
priortype: informative