Read 1: /project/berglandlab/DEST2.0_reads/SouthAmerica_Reads/Conocotoco_1.fastq.gz
Read 2: /project/berglandlab/DEST2.0_reads/SouthAmerica_Reads/Conocotoco_2.fastq.gz
Sample name: EC_Pic_Con_1_2019-06-26
Output directory: /project/berglandlab/DEST/dest_mapped/RECENT_OUTPUTS
Number of cores used: 7
Max cov: 0.95
Min cov 4
base-quality-threshold 25
illumina-quality-coding 1.8
min-indel 5